Display significant pathways for a given contrast and direction

Display significant pathways for a given contrast and direction

Usage

wrapper_dispaly_significant_ora(
  x,
  contrast,
  direction = "both",
  sort_by = "pval",
  topn = 20,
  pval = 0.05,
  geneset_vars = "GenesetID",
  pval_prefix = "P.Value",
  adjp_prefix = "adj.P.Val",
  genes_prefix = "Genes",
  stats_prefixes = c("GeneRatio", "BgRatio", "Observed", "Expected"),
  sep = "_",
  caption = NULL
)

Arguments

x

TopTable with ORA results.