Run GSEA — wrapper_gsea_core • BiomarkerWrappers

Run GSEA with fgsea::fgseaMultilevel

Usage

wrapper_gsea_core(
  statistic,
  genesets,
  genesets_extra_info = NULL,
  gene_mapping = NULL,
  name = "",
  sep = "_",
  min_GS_size = 10,
  max_GS_size = 500,
  topn_genes = 20,
  statistic_name = "t",
  scoreType = NULL,
  nPermSimple = 1000
)

Arguments

statistic: Named vector of t statistics or logFC from limma.