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Merge topTable results for multiple contrasts

wrapper_merge_topTables.Rd

Merge topTable results for multiple contrasts

Usage

wrapper_merge_topTables(
  fit,
  contrasts,
  gene_vars = c("Hgnc_Symbol", "EntrezIDs", "GeneName"),
  res_vars = c("logFC", "AveExpr", "t", "P.Value", "adj.P.Val"),
  sep = "_",
  pval = 0.05,
  lfc = c(0, 1)
)

Arguments

fit

Fit should be an object of class `MArrayLM` as produced by `lmFit` and `eBayes` where we can apply `topTable`.