Over-representation analysis (ORA)

Usage

wrapper_ora(
  x,
  genesets,
  contrasts = NULL,
  universe = NULL,
  genesets_extra_info = NULL,
  gene_mapping = NULL,
  method = "hypergeometric",
  min_GS_size = 10,
  max_GS_size = 500,
  directions = c("up", "down", "both"),
  min_DE_size = 5,
  topn = Inf,
  pval = 0.05,
  lfc = 0,
  gene_var = "EntrezIDs",
  lfc_prefix = "logFC",
  pval_prefix = "P.Value",
  adjp_prefix = "adj.P.Val",
  sep = "_",
  topn_genes = 20
)

Arguments

x: TopTable with DGE results.