Testing biomarker effect on response with Pearson's Chi-squared test or Cochran-Mantel-Haenszel Chi-Squared Test

Usage

wrapper_pearsons_test_biomarker(
  data,
  response_var,
  biomarker_vars,
  treatment_var = NULL,
  strata_vars = NULL,
  strat2_var = NULL,
  method = "pearson",
  variable_names = NULL,
  caption = NULL,
  print_total = TRUE,
  print_non_response = TRUE,
  print_pvalues = TRUE,
  print_adjpvalues = TRUE
)

Arguments

data: Data frame.
response_var: Name of categorical variable defining successes and failures where the first level corresponds to failure and the second level corresponds to success.
biomarker_vars: Vector of biomarker names.
strata_vars: Stratification factors. If defined, then the Cochran-Mantel-Haenszel Chi-Squared Test is applied.
method: Method 'pearson' or 'fisher' test.
variable_names: Named vector with variable names. If not supplied, variable names are created by replacing in column names underscores with spaces.
caption: Caption for the table with results.
print_total: Logical. Whether to print total number of samples.
print_pvalues: Logical. Whether to print p-values.
print_adjpvalues: Logical. Whether to print adjusted p-values.